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a. Create the automask and/or autoweight from the '-base' dataset. ... for evaluating the cost functional (unless '-nmatch 100%' is used). b. If the automask is ' ...
Warp (spatially transform) one 3D dataset. ... the user supplies. * Such a transformation can be computed by 3dWarpDrive or 3dAllineate, by matching one dataset ...
Aug 31, 2022 · TLDR: the -cmass option is off by default because it's not necessary in the common case where your anatomical and EPI volumes start off somewhat ...
interpolation method to use during matching process NN - nearest neighbor. final_interpolator. interpolation used to create the output dataset. wsinc5 - ...
This concatenated affine matrix is used with the 3dAllineate command to create ... # warp the all-1 dataset for extents masking 3dAllineate -base {$subj}_ ...
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Aug 7, 2018 · We use 3DAllineate, which has a variety of cost ... So we have this program, 3DAllineate, which can compare data from different modalities.
3dAllineate –base s01_mprage.hdr –1Dfile FM2REF.1D –clbin 30 s01_B0map_mag.hdr. 3dAllineate –base s01_mprage.hdr -1Dapply FM2REF.1D –prefix rs01_B0map_phase ...
Dec 9, 2020 · but you could use AFNI's 3dAllineate for linear affine registration (default: 3 translation + 3 rotation + 3 scale + 3 shear DOFs) and ...