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a. Create the automask and/or autoweight from the '-base' dataset. ... for evaluating the cost functional (unless '-nmatch 100%' is used). b. If the automask is ' ...
* Here, the spatical transformation is defined by a matrix; thus, it is an affine warp. * Program 3dAllineate can also compute such an affine transformation,
Aug 31, 2022 · TLDR: the -cmass option is off by default because it's not necessary in the common case where your anatomical and EPI volumes start off somewhat ...
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Arguments ; nifti object or NIfTI filename of fixed image, target of registration · cost function that defines the matching between the file and the fixed image ...
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3dallineate. Topic, Replies, Views, Activity. Why is default -cmass off in 3dAllineate? afni_procpy , 3dallineate. 4, 569, September 5, 2022. Home · Categories ...
This concatenated affine matrix is used with the 3dAllineate command to create ... # warp the all-1 dataset for extents masking 3dAllineate -base {$subj}_ ...
Feb 27, 2014 · AFNI's main tool for dealing with transforms is cat_matvec, but in many cases you may not need to use it! Everyone knows that transform ...
3dAllineate –base s01_mprage.hdr –1Dfile FM2REF.1D –clbin 30 s01_B0map_mag.hdr. 3dAllineate –base s01_mprage.hdr -1Dapply FM2REF.1D –prefix rs01_B0map_phase ...